ascat.GCcorrect         ascat.GCcorrect
ascat.asmultipcf        Allele-specific segmentation of multiple
                        samples
ascat.aspcf             ascat.aspcf
ascat.correctLogR       ascat.correctLogR
ascat.getAlleleCounts   Obtain allele counts for a given set of loci
                        through external program alleleCounter.
ascat.getBAFsAndLogRs   Obtain BAF and LogR from the allele counts.
ascat.loadData          ascat.loadData
ascat.metrics           Function to extract different metrics from
                        ASCAT profiles.
ascat.plotAdjustedAscatProfile
                        ascat.plotAdjustedAscatProfile
ascat.plotAscatProfile
                        ascat.plotAscatProfile
ascat.plotGenotypes     ascat.plotGenotypes
ascat.plotNonRounded    ascat.plotNonRounded
ascat.plotRawData       ascat.plotRawData
ascat.plotSegmentedData
                        ascat.plotSegmentedData
ascat.plotSunrise       ascat.plotSunrise
ascat.predictGermlineGenotypes
                        ascat.predictGermlineGenotypes
ascat.prepareHTS        Extract both logR and BAF values from
                        sequencing data
ascat.prepareTargetedSeq
                        Method to extract a curated list of SNPs
                        covered by a targeted sequencing experiment.
ascat.runAscat          ascat.runAscat
ascat.synchroniseFiles
                        Synchronise SNPs across files
